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Accurate prediction of potential druggable proteins based on genetic algorithm and Bagging-SVM ensemble classifier

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成果类型:
期刊论文
作者:
Lin, Jianying;Chen, Hui;Li, Shan;Liu, Yushuang;Li, Xuan;...
通讯作者:
Yu, Bin
作者机构:
[Lin, Jianying; Chen, Hui; Li, Shan; Liu, Yushuang; Yu, Bin] Qingdao Univ Sci & Technol, Coll Math & Phys, Qingdao 266061, Shandong, Peoples R China
[Lin, Jianying; Chen, Hui; Li, Shan; Liu, Yushuang; Yu, Bin] Qingdao Univ Sci & Technol, Artificial Intelligence & Biomed Big Data Res Ctr, Qingdao 266061, Shandong, Peoples R China
[Lin, Jianying; Chen, Hui; Li, Xuan] Chinese Acad Sci, Shanghai Inst Biol Sci, Inst Plant Physiol & Ecol, Key Lab Synthet Biol,CAS Ctr Excellence Mol Plant, Shanghai 200032, Peoples R China
[Yu, Bin] Changsha Univ Sci & Technol, Sch Math & Stat, Changsha 410114, Hunan, Peoples R China
[Yu, Bin] Univ Sci & Technol China, Sch Life Sci, Hefei 230027, Anhui, Peoples R China
通讯机构:
[Yu, Bin] Q
Qingdao Univ Sci & Technol, Coll Math & Phys, Qingdao 266061, Shandong, Peoples R China.
语种:
英文
关键词:
Druggable proteins;Feature extraction;Genetic algorithm;Support vector machine;Bagging;Ensemble classifier
期刊:
Artificial Intelligence in Medicine
ISSN:
0933-3657
年:
2019
卷:
98
期:
Jul.
页码:
35-47
基金类别:
The authors sincerely thank the anonymous reviewers for their many valuable comments that have improved this manuscript. This work was supported by the National Natural Science Foundation of China (Nos. 61863010 and 11771188 ), the Key Research and Development Program of Shandong Province of China ( 2019GGX101001 ), the Natural Science Foundation of Shandong Province of China (No. ZR2018MC007 ), the Project of Shandong Province Higher Educational Science and Technology Program (No. J17KA159 ), the Scientific Research Fund of Hunan Provincial Key Laboratory of Mathematical Modeling and Analysis in Engineering (No. 2018MMAEZD10 ), the Key Laboratory Open Foundation of Shandong Province , the College Students’ Innovative Practice Training Program of Chinese Academy of Sciences , and the College Students’ Innovative Entrepreneurial Training Program (No. 201710426046 ).
机构署名:
本校为其他机构
院系归属:
数学与统计学院
摘要:
Discovering and accurately locating drug targets is of great significance for the research and development of new drugs. As a different approach to traditional drug development, the machine learning algorithm is used to predict the drug target by mining the data. Because of its advantages of short time and low cost, it has received more and more attention in recent years. In this paper, we propose a novel method for predicting druggable proteins. Firstly, the features of the protein sequence are extracted by combining Chou's pseudo amino acid c...

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